Working snapcraft image #3121

koppor · 2017-08-18T07:37:34Z

This tracks the current state of the snapcraft image. This main text is updated to reflect the current state.

Howto install and update

Beta version:

sudo snap install jabref --beta

Latest snapshot:

sudo snap install jabref --edge --devmode
sudo snap refresh jabref --edge --devmode

Current state

Registered at https://build.snapcraft.io/user/koppor
Travis is used for building as currently only CircleCI 2.0 is supported for building and we use CircleCI 1.0 for building. A switch to CircleCI 2.0 is tested at branch circleci20, but does currently not work and it does not seem to be easy to get it running
build on Travis takes approx. 10 min
build will take place at snapcraft-ci branch only to avoid much too much development versions at Ubuntu.
Dashboard https://dashboard.snapcraft.io/dev/snaps/7999/

Open points

Snapcraft image does not allow opening linked files - Snapcraft image does not allow opening linked files #3159
Snapcraft image does not provide icon - Snapcraft image does not provide icon #3160
publish stable version to Ubuntu's snap repository (https://uappexplorer.com/snaps) (currently no version visible) - has to be done manually
Use https://build.snapcraft.io/ instead of travis
- gradle binary cannot be downloaded from http://build.snapcraft.io. See: Allow downloading gradle binary canonical-web-and-design/build.snapcraft.io#918 -> we have to wait until the fix ant plugin, gradle plugin: add support for authenticated proxies canonical/snapcraft#1490 is released in snapcraft 2.34
- Adapt build.gradle to include the version update in snapcraft.yml, currently done by /~https://github.com/JabRef/jabref/blob/a06fa19ecf5235c0cd9d44e8dbdcd402ec7bf0ae/scripts/run-snapcraft.sh
Minor: Follow up https://bugs.launchpad.net/snapcraft/+bug/1718105
Add documentation: http://discourse.jabref.org/t/connecting-with-libreoffice-snap-under-ubuntu-16-04/980/7?u=koppor
Approval - see Get snapcraft build approved #5417 (comment)

Howto build locally

docker run -it -v /d/git-repositories/jabref/jabref:/tmp/snap koppor/snapcraft-java-de bash
cd /tmp/jabref
snapcraft
Read along at https://snapcraft.io/docs/build-snaps/publish

References

http://snapcraft.io/docs/build-snaps/metadata
https://snapcraft.io/docs/build-snaps/publish
https://wiki.ubuntu.com/snapcraft/parts
App store of Ubuntu: https://developer.ubuntu.com/en/desktop/ and https://shop.canonical.com/index.php?cPath=19
https://gist.github.com/evandandrea/c754964bfdfb176844f26f605ebbb8db
The gradle support is very new (see Add a gradle demo and test canonical/snapcraft#912)

The text was updated successfully, but these errors were encountered:

ilippert · 2017-10-08T11:25:00Z

If I may ask, will this snapshot be updated to the 4.0 version?

koppor · 2018-02-07T18:08:10Z

We currently have no money to pay someone for that (donations page). No one of the JabRef team gets paid for JabRef. Thus, working on this really depends on the availability of our personal free time. It seems that I do not have time for that this year.

We really welcome feedback on our volunteer work. In case you can spend some more time we would really like to encourage you to check https://help.jabref.org/en/FAQcontributing - especially the part asking for improvement of our help pages. This would help JabRef getting better as a whole. 🥇

JoKalliauer · 2018-07-24T10:44:47Z

@koppor : I tried
sudo snap install jabref --beta

and got:

error: The publisher of snap "jabref" has indicated that they do not consider
       this revision to be of production quality and that it is only meant for
       development or testing at this point. As a consequence, this snap will
       not refresh automatically and may perform arbitrary system changes
       outside of the security sandbox which snaps are generally confined to,
       which may put your system at risk.

       If you understand and want to proceed, repeat the command including
       --devmode; if instead you want to install the snap forcing it into
       strict confinement, repeat the command including --jailmode.

Since I want to "put my system at risk" I used: sudo snap install jabref --beta --jailmode
and get the response: jabref (beta) 4.0-dev from 'koppor' installed

Now if I start: jabref I still get jabref 3.8.2, but I would like to use JabRef 4.0 (or higher), because JabRef3 breaks my files just by starting the program. (Removes Groups)

koppor · 2018-07-24T16:15:58Z

Please uninstall the normal JabRef package using sudo apt-get remove jabref. Reason: The snap does not replace the existing jabref installation Johannes Kalliauer <notifications@github.com> schrieb am Di., 24. Juli 2018, 12:44:

…

@koppor </~https://github.com/koppor> : I tried sudo snap install jabref --beta and got: error: The publisher of snap "jabref" has indicated that they do not consider this revision to be of production quality and that it is only meant for development or testing at this point. As a consequence, this snap will not refresh automatically and may perform arbitrary system changes outside of the security sandbox which snaps are generally confined to, which may put your system at risk. If you understand and want to proceed, repeat the command including --devmode; if instead you want to install the snap forcing it into strict confinement, repeat the command including --jailmode. Since I want to "put my system at risk" I used: sudo snap install jabref --beta --jailmode and get the response: jabref (beta) 4.0-dev from 'koppor' installed Now if I start: jabref I still get jabref 3.8.2, but I would like to use JabRef 4.0 (or higher), because JabRef3 breaks my files just by starting the program. (Removes Groups) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#3121 (comment)>, or mute the thread </~https://github.com/notifications/unsubscribe-auth/ABTafnpoCLuawr9gEfiIQ9E8ftDRW5Ziks5uJvqjgaJpZM4O7NCh> .

JoKalliauer · 2018-07-27T09:44:56Z

Now jabref does not start at all, with the command jabref

libGL error: MESA-LOADER: failed to retrieve device information
libGL error: Version 4 or later of flush extension not found
libGL error: failed to load driver: i915
libGL error: MESA-LOADER: failed to retrieve device information
...

Do I need to install anything?
maybe OpenGL: http://ubuntuhandbook.org/index.php/2018/05/install-mesa-18-0-4-ubuntu-18-04-lts/

Uninstalled packages with `sudo apt autoremove` after removing jabref

libandroid-json-java libantlr4-runtime-java libglazedlists-java libhttpasyncclient-java libhttpmime-java libjava-string-similarity-java libjempbox-java libjgoodies-common-java libjgoodies-forms-java libjgoodies-looks-java libjhlabs-filters-java liblightcouch-java liblog4j2-java libmicroba-java libmongodb-java libspin-java libswingx-java libunirest-java-java

Error messages in Terminal

libGL error: MESA-LOADER: failed to retrieve device information
libGL error: Version 4 or later of flush extension not found
libGL error: failed to load driver: i915
libGL error: MESA-LOADER: failed to retrieve device information
Prism-ES2 Error : GL_VERSION (major.minor) = 1.3
Gtk-Message: Failed to load module "overlay-scrollbar"
Gtk-Message: Failed to load module "gail"
Gtk-Message: Failed to load module "atk-bridge"

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",

(java:5768): Gtk-WARNING **: Unable to locate theme engine in module_path: "murrine",
java.io.IOException: Cannot run program "/usr/bin/xprop": error=2, No such file or directory
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
	at java.lang.Runtime.exec(Runtime.java:620)
	at java.lang.Runtime.exec(Runtime.java:450)
	at java.lang.Runtime.exec(Runtime.java:347)
	at org.GNOME.Accessibility.AtkWrapper.<clinit>(AtkWrapper.java:34)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
	at java.lang.Class.newInstance(Class.java:442)
	at java.awt.Toolkit.loadAssistiveTechnologies(Toolkit.java:805)
	at java.awt.Toolkit.getDefaultToolkit(Toolkit.java:886)
	at java.awt.Toolkit.getEventQueue(Toolkit.java:1734)
	at java.awt.EventQueue.invokeLater(EventQueue.java:1266)
	at javax.swing.SwingUtilities.invokeLater(SwingUtilities.java:1290)
	at org.jabref.JabRefMain.start(JabRefMain.java:53)
	at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$8(LauncherImpl.java:863)
	at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$7(PlatformImpl.java:326)
	at com.sun.javafx.application.PlatformImpl.lambda$null$5(PlatformImpl.java:295)
	at java.security.AccessController.doPrivileged(Native Method)
	at com.sun.javafx.application.PlatformImpl.lambda$runLater$6(PlatformImpl.java:294)
	at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
	at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
	at com.sun.glass.ui.gtk.GtkApplication.lambda$null$5(GtkApplication.java:139)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.IOException: error=2, No such file or directory
	at java.lang.UNIXProcess.forkAndExec(Native Method)
	at java.lang.UNIXProcess.<init>(UNIXProcess.java:247)
	at java.lang.ProcessImpl.start(ProcessImpl.java:134)
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
	... 24 more
Jul 27, 2018 11:29:16 AM java.util.prefs.FileSystemPreferences$6 run
WARNING: Prefs file removed in background /home/jkalliau/.java/.userPrefs/org/jabref/prefs.xml
11:29:16.477 [AWT-EventQueue-0] INFO  org.jabref.migrations.PreferencesMigrations - Migrating old custom entry types.
Jul 27, 2018 11:29:16 AM java.util.prefs.FileSystemPreferences$6 run
WARNING: Prefs file removed in background /home/jkalliau/.java/.userPrefs/org/jabref/customizedBibtexTypes/prefs.xml
11:29:18.036 [AWT-EventQueue-0] ERROR org.jabref.FallbackExceptionHandler - Uncaught exception Occurred in Thread[AWT-EventQueue-0,6,main]
java.lang.SecurityException: Could not lock User prefs. Lock file access denied.
	at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:937) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824) ~[?:1.8.0_131]
	at org.jabref.preferences.JabRefPreferences.storeCustomEntryTypes(JabRefPreferences.java:1220) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.gui.customentrytypes.CustomEntryTypesManager.saveCustomEntryTypes(CustomEntryTypesManager.java:32) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.gui.customentrytypes.CustomEntryTypesManager.saveCustomEntryTypes(CustomEntryTypesManager.java:22) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.migrations.CustomEntryTypePreferenceMigration.upgradeStoredCustomEntryTypes(CustomEntryTypePreferenceMigration.java:39) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.migrations.PreferencesMigrations.upgradeStoredCustomEntryTypes(PreferencesMigrations.java:147) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.JabRefMain.start(JabRefMain.java:78) ~[JabRef-4.0-dev.jar:?]
	at org.jabref.JabRefMain.lambda$start$0(JabRefMain.java:53) ~[JabRef-4.0-dev.jar:?]
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) ~[?:1.8.0_131]
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756) ~[?:1.8.0_131]
	at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:1.8.0_131]
	at java.awt.EventQueue$3.run(EventQueue.java:709) ~[?:1.8.0_131]
	at java.awt.EventQueue$3.run(EventQueue.java:703) ~[?:1.8.0_131]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_131]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80) ~[?:1.8.0_131]
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:726) ~[?:1.8.0_131]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) [?:1.8.0_131]
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [?:1.8.0_131]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [?:1.8.0_131]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:1.8.0_131]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [?:1.8.0_131]
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [?:1.8.0_131]
11:29:47.956 [Timer-0] ERROR org.jabref.FallbackExceptionHandler - Uncaught exception Occurred in Thread[Timer-0,6,main]
java.lang.SecurityException: Could not lock User prefs. Lock file access denied.
	at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:937) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50) ~[?:1.8.0_131]
	at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432) ~[?:1.8.0_131]
	at java.util.TimerThread.mainLoop(Timer.java:555) ~[?:1.8.0_131]
	at java.util.TimerThread.run(Timer.java:505) ~[?:1.8.0_131]

^C

2018-07-27 13:28:05,008 Thread-5 WARN Unable to register Log4j shutdown hook because JVM is shutting down. Using SimpleLogger
ERROR FallbackExceptionHandler Uncaught exception Occurred in Thread[Thread-5,6,main]
 java.lang.SecurityException: Could not lock User prefs. Lock file access denied.
	at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:937)
	at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925)
	at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729)
	at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824)
	at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464)
	at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50)
	at java.util.prefs.FileSystemPreferences$4$1.run(FileSystemPreferences.java:442)

koppor · 2018-08-07T05:45:44Z

Other Option: try to use http://subuser.org

koppor · 2019-02-03T20:11:25Z

@LyzardKing @Siedlerchr Do you think, we remove the development mode in the snap and release it as beta?

As far as I understand #4619 (comment), we need to go to classic mode accepting that it requires manual approval by Canonical.

Options as by https://docs.snapcraft.io/snap-confinement/6233:

Strict

Used by the majority of snaps. Strictly confined snaps run in complete isolation, and consequently, can not access your files, network, processes or any other system resource without requesting specific access via an interface (see below).

Classic

Allows access to your system’s resources in much the same way traditional packages do. To safeguard against abuse, publishing a classic snap requires manual approval, and installation requires the --classic command line argument.

Devmode

A special mode for snap creators and developers. A devmode snap runs as a strictly confined snap with full access to system resources, and produces debug output to identify unspecified interfaces. Installation requires the --devmode command line argument.

LyzardKing · 2019-02-04T08:44:12Z

Classic mode would be needed for the integration with libreoffice and the other editors.
With a strict (or devmode) confinement there's no way to add that integration as far as I know.
So devmode is not needed any more, strict mode works without editor integration.
The choice is between a confined snap or a classic snap.
To request approval for a classic snap (once it works) you need to ask on the forum, explaining why it's needed

EDIT: in classic mode I get an error if I try and connect with libreoffice: https://paste.ubuntu.com/p/j7CzKvJvCG/

Siedlerchr · 2019-02-05T12:05:23Z

@LyzardKing Have you installed libre office also as snap or as normal package? And did you install the libreoffice-java stuff?

LyzardKing · 2019-02-05T20:30:43Z

It won't work with either one...
Being a confined snap it cannot access neither the deb nor the snap.
It has access only to its home and root (plus the non hidden parts of the user home...)

Siedlerchr · 2019-02-16T17:25:10Z

@LyzardKing I just saw that the new jdk202 release now has a backport of GTK3 https://bugs.java.com/bugdatabase/view_bug.do?bug_id=JDK-8207322
Do we need to change the deps now?

LyzardKing · 2019-02-16T17:31:21Z

The package in xenial (the base for jabref) is not updated.
When it changes I can test it and let you know!
I'll put an alert on the package page (https://packages.ubuntu.com/xenial/openjdk-8-jre)
ATM it's on 8u191

koppor · 2019-10-09T19:21:02Z

@LyzardKing Thank you for #5379

Are the following two frozen issues fixed by that PR?

LyzardKing · 2019-10-09T21:40:39Z

They should both be fixed. At least I can say they work on ubuntu mate..

koppor · 2020-03-29T22:07:47Z

Follow up at #5417

koppor added dev: build-system platform: linux labels Aug 18, 2017

koppor mentioned this issue Aug 18, 2017

Initial shot for snapcraft.yaml #2345

Merged

11 tasks

stefan-kolb mentioned this issue Aug 18, 2017

Add Jabref to app stores #1371

Closed

6 tasks

koppor mentioned this issue Aug 18, 2017

jabref 2.10 fails to start on Ubuntu 15.10 #168

Closed

Siedlerchr mentioned this issue Aug 18, 2017

Freeze after trying to edit bibtex entry details (threaddump available) #3129

Closed

koppor mentioned this issue Aug 19, 2017

JabRef crashes in Debian #2832

Closed

ilippert mentioned this issue Aug 26, 2017

Snapcraft image does not allow opening linked files #3159

Closed

koppor mentioned this issue Aug 31, 2017

Snapcraft image does not provide icon #3160

Closed

Siedlerchr mentioned this issue Sep 13, 2017

Cannot import groups when opening a bibtex database created by a windows version of jabref with the ubuntu version #3215

Closed

ilippert mentioned this issue Sep 15, 2017

snapshot: file attachments view wrong #3222

Closed

koppor added the freeze label Feb 7, 2018

koppor closed this as completed Feb 7, 2018

koppor mentioned this issue Apr 3, 2018

Implement native messaging #3246

Merged

8 tasks

koppor mentioned this issue Apr 27, 2018

Unable to start jabref 4.2 on Ubuntu 17.10 standard installation after "update" #3991

Closed

1 task

koppor added help wanted good first issue An issue intended for project-newcomers. Varies in difficulty. labels Jun 27, 2018

Siedlerchr mentioned this issue Jul 24, 2018

NameChange and update to JabRef4 #4232

Closed

6 tasks

Siedlerchr mentioned this issue Jan 26, 2019

Update snapcraft.yaml #4615

Merged

6 tasks

koppor reopened this Jan 27, 2019

tobiasdiez removed freeze good first issue An issue intended for project-newcomers. Varies in difficulty. labels Jan 27, 2019

Siedlerchr mentioned this issue Jan 28, 2019

snap: disable tests build, add removable media and specify architectures #4619

Merged

This was referenced Oct 11, 2019

Add jabfox json file to snap package #5422

Merged

Can't run today's snap/edge 2019-09-11 #5307

Closed

koppor added platform: snap When JabRef is run as a snap on linux and removed help wanted labels Oct 13, 2019

koppor closed this as completed Mar 29, 2020

LyzardKing mentioned this issue Apr 26, 2020

JabRef 5.0 no connection to LibreOffice possible #6353

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Working snapcraft image #3121

Working snapcraft image #3121

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koppor commented Mar 29, 2020

Working snapcraft image #3121

Working snapcraft image #3121

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koppor commented Aug 18, 2017 • edited Loading

Howto install and update

Current state

Open points

Howto build locally

References

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koppor commented Feb 3, 2019

Strict

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Devmode

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