From 93a60f68b718db6b186c2108f593ee0786432dbd Mon Sep 17 00:00:00 2001
From: Chiara Rasi <rasi.chiara@gmacil.com>
Date: Tue, 7 May 2024 10:10:09 +0200
Subject: [PATCH 1/2] Fix updating gene panel displayed on report page

---
 CHANGELOG.md                               | 3 +++
 src/chanjo2/meta/handle_report_contents.py | 5 ++++-
 src/chanjo2/templates/report.html          | 2 +-
 3 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 359ae07a..541cf682 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,6 @@
+### Fixed
+- Updating gene panel name using the web form on report page
+
 ## [1.6]
 ### Added
 - Coverage report and genes coverage overview endpoints now accept also requests with application/x-www-form-urlencoded data
diff --git a/src/chanjo2/meta/handle_report_contents.py b/src/chanjo2/meta/handle_report_contents.py
index 445f1728..9463685d 100644
--- a/src/chanjo2/meta/handle_report_contents.py
+++ b/src/chanjo2/meta/handle_report_contents.py
@@ -86,7 +86,10 @@ def get_report_data(
             "default_level": query.default_level,
             "interval_type": query.interval_type.value,
             "case_name": query.case_display_name,
-            "hgnc_gene_ids": [gene.hgnc_id for gene in genes],
+            "hgnc_gene_ids": [gene.hgnc_id for gene in genes]
+            or query.hgnc_gene_ids
+            or query.hgnc_gene_symbols
+            or query.ensembl_gene_ids,
             "build": query.build.value,
             "completeness_thresholds": query.completeness_thresholds,
             "samples": [_serialize_sample(sample) for sample in query.samples],
diff --git a/src/chanjo2/templates/report.html b/src/chanjo2/templates/report.html
index 54baf907..8ecbd274 100644
--- a/src/chanjo2/templates/report.html
+++ b/src/chanjo2/templates/report.html
@@ -41,7 +41,7 @@ <h2 class="accordion-header" id="flush-headingOne">
 
 				<div class="col-6">
 				  <label class="form-label">Gene panel name to display</label>
-				  <input class="form-control" id="panel_name" type="text" placeholder="Skeletal dysplasia 3.2" value="{{ extras.panel_name or '' }}">
+				  <input class="form-control" id="panel_name" name="panel_name" type="text" placeholder="Skeletal dysplasia 3.2" value="{{ extras.panel_name or '' }}">
 				</div>
 			  </div>
 			</div>

From 74f05ddfad685ce704f09c7e70f7e51929571683 Mon Sep 17 00:00:00 2001
From: Chiara Rasi <rasi.chiara@gmacil.com>
Date: Tue, 7 May 2024 10:23:21 +0200
Subject: [PATCH 2/2] Fixed changelog

---
 CHANGELOG.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 541cf682..c29a593c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,4 @@
+## [unreleased]
 ### Fixed
 - Updating gene panel name using the web form on report page