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Commits on Jan 5, 2024

• Update Readme.md

  PolinaBevad

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Commits on Jun 23, 2022

• Update Readme.md

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  PolinaBevad

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• Update Readme.md

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Commits on Nov 12, 2021

• Updated changelog.txt

  PolinaBevad

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  a7f4e77

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• Merge pull request #347 from PolinaBevad/version_updates_183

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• Updated submodule and version.

  PolinaBevad

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• Merge pull request #346 from PolinaBevad/fix_del_ins

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• Fixed check for introns for the case when deletion is next to insertion.

  PolinaBevad

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Commits on May 27, 2021

• Added PSTD flag description.

  PolinaBevad

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Commits on Sep 22, 2020

• Update Readme.md

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  PolinaBevad

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Commits on Sep 16, 2020

• Updated changelog.txt

  pcingola

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• Project updated

  pcingola

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• Merge pull request #319 from PolinaBevad/moved_back_to_4.2

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  pcingola

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• Update Readme.md

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  PolinaBevad

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• Updated integration tests to vcf 4.2

  PolinaBevad

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Commits on Sep 8, 2020

• Updated changelog.txt

  pcingola

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• Project updated

  pcingola

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• Merge pull request #317 from PolinaBevad/integration_tests_validator

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  pcingola

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Commits on Sep 2, 2020

• Updated version.

  PolinaBevad

  committed
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• Added validation of VCF files in integration tests. Fixed flag InDelLikely name in expected file and duplicated Bias filter. Updated submodule.

  PolinaBevad

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Commits on Aug 25, 2020

• Project updated

  pcingola

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• Project updated

  pcingola

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• Updated changelog.txt

  pcingola

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• Merge pull request #314 from bgruening/patch-1

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  pcingola

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• add conda and usegalaxy badge

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  bgruening

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Commits on Jul 29, 2020

• Merge pull request #310 from PolinaBevad/removed_updated_comment

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  pcingola

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Commits on Jul 28, 2020

• Updated submodule

  PolinaBevad

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• Removed updated comment

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Commits on Jul 7, 2020

• Merge pull request #307 from PolinaBevad/changes_for_option_M

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  pcingola

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• Merge pull request #297 from PolinaBevad/fix_issue_294

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  pcingola

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• Merge pull request #293 from PolinaBevad/issue_283_hardclips

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  pcingola

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• Merge pull request #280 from lbergelson/lb_update_htsjdk_to_modern_version

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  pcingola

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Commits on Jul 1, 2020

• Added fixes to integration tests due to changes in option M in Perl var2vcf_paired.pl.

  PolinaBevad

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Commits on May 26, 2020

• Added update for pileup amplicon references (only amplicon as somatic and simple are counted correctly) using reference result.

  PolinaBevad

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Commits on May 25, 2020

• Fixed type for variant in case when ref==alt (for pileup mode).

  PolinaBevad

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