bionano_samples.yaml

K562_Irys: 
  path: ./
  graph: graphs/K562_Irys_amplicon2_graph.txt
  contigs: contigs/K562_BSPQI_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/K562_Irys_amplicon2_graph_BSPQI.cmap
  instrument: Irys
  enzyme: BspQI
  min_map_len: 10
  reference_build: hg19
  xmaps: ~

GBM39:
  path: ./
  graph: graphs/GBM39_amplicon1_graph.txt
  contigs: contigs/GBM39_BSPQI_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/GBM39_amplicon1_graph_BSPQI.cmap
  instrument: Irys
  enzyme: BspQI
  min_map_len: 10
  reference_build: hg19
  xmaps: ~

HK301: 
  path: ./
  graph: graphs/HK301_amplicon1_graph.txt
  contigs: contigs/HK301_BSPQI_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/HK301_amplicon1_graph_BSPQI.cmap
  instrument: Irys
  enzyme: BspQI
  min_map_len: 10
  reference_build: hg19
  xmaps: ~

K562_Saphyr:
  path: ./
  graph: graphs/K562_Saphyr_amplicon2_graph.txt
  contigs: contigs/K562_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/K562_Saphyr_amplicon2_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~

HCC827_FF21A1:
  path: ./
  graph: graphs/HCC827_FF21A1_amplicon1_graph.txt
  contigs: contigs/HCC827_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/HCC827_FF21A1_amplicon1_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~

HCC827_FF21A2-6:
  path: ./
  graph: graphs/HCC827_FF21A2-6_graph.txt
  contigs: contigs/HCC827_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/HCC827_FF21A2-6_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~

H460:
  path: ./
  graph: graphs/H460_amplicon1_graph.txt
  contigs: contigs/H460_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/H460_amplicon1_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~

T47D:
  path: ./
  graph: graphs/T47D_amplicon1_graph.txt
  contigs: contigs/T47D_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/T47D_amplicon1_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~

CAKI2: 
  path: ./
  graph: graphs/CAKI2_amplicon1_graph.txt
  contigs: contigs/CAKI2_DLE1_EXP_REFINEFINAL1.cmap
  cmap: graph_cmaps/CAKI2_amplicon1_graph_DLE1.cmap
  instrument: Saphyr
  enzyme: DLE1
  min_map_len: 12
  reference_build: hg19
  xmaps: ~